hdf5/fortran/examples/refregexample.f90

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!
!
!    This program shows how to create, store and dereference references 
!    to the dataset regions.
!    Program creates a file and writes two dimensional integer dataset
!    to it. Then program creates and stores references to the hyperslab
!    and 3 points selected in the integer dataset, in the second dataset. 
!    Program reopens the second dataset, reads and dereferences region
!    references, and then reads and displays selected data from the 
!    integer dataset.
!    
     PROGRAM REG_REFERENCE

        USE HDF5 ! This module contains all necessary modules 
        
     IMPLICIT NONE
     CHARACTER(LEN=10), PARAMETER :: filename = "FORTRAN.h5"
     CHARACTER(LEN=6), PARAMETER :: dsetnamev = "MATRIX"
     CHARACTER(LEN=17), PARAMETER :: dsetnamer = "REGION_REFERENCES"
      
     INTEGER(HID_T) :: file_id       ! File identifier 
     INTEGER(HID_T) :: space_id      ! Dataspace identifier 
     INTEGER(HID_T) :: spacer_id     ! Dataspace identifier 
     INTEGER(HID_T) :: dsetv_id      ! Dataset identifier 
     INTEGER(HID_T) :: dsetr_id      ! Dataset identifier 
     INTEGER     ::   error
     TYPE(hdset_reg_ref_t_f) , DIMENSION(2) :: ref     ! Buffers to store references
     TYPE(hdset_reg_ref_t_f) , DIMENSION(2) :: ref_out !
     INTEGER(HSIZE_T), DIMENSION(2) :: dims = (/2,9/)  ! Datasets dimensions
     INTEGER(HSIZE_T), DIMENSION(1) :: dimsr = (/2/)   ! 
     INTEGER(HSIZE_T), DIMENSION(2) :: start
     INTEGER(HSIZE_T), DIMENSION(2) :: count
     INTEGER :: rankr = 1 
     INTEGER :: rank = 2
     INTEGER , DIMENSION(2,9) ::  data 
     INTEGER , DIMENSION(2,9) ::  data_out = 0 
     INTEGER(HSIZE_T) , DIMENSION(2,3) :: coord
     INTEGER(SIZE_T) ::num_points = 3  ! Number of selected points
     INTEGER :: i, j
     INTEGER(HSIZE_T), DIMENSION(1) :: ref_size
     INTEGER(HSIZE_T), DIMENSION(2) :: data_dims
     coord = reshape((/1,1,2,7,1,9/), (/2,3/))   ! Coordinates of selected points
     data = reshape ((/1,1,1,2,2,2,3,3,3,4,4,4,5,5,5,6,6,6/), (/2,9/))
     !
     !  Initialize FORTRAN interface.
     !
     CALL h5open_f(error)
     !
     !  Create a new file.
     !
     CALL h5fcreate_f(filename, H5F_ACC_TRUNC_F, file_id, error)
                                         ! Default file access and file creation
                                         ! properties are used. 
     ! 
     ! Create  dataspaces:
     ! 
     ! for dataset with references to dataset regions 
     !
     CALL h5screate_simple_f(rankr, dimsr, spacer_id, error)
     !
     ! for integer dataset 
     !
     CALL h5screate_simple_f(rank, dims, space_id, error)
     !
     ! Create  and write datasets:
     !
     ! Integer dataset 
     !
     CALL h5dcreate_f(file_id, dsetnamev, H5T_NATIVE_INTEGER, space_id, &
                      dsetv_id, error)
     data_dims(1) = 2
     data_dims(2) = 9 
     CALL h5dwrite_f(dsetv_id, H5T_NATIVE_INTEGER, data, data_dims, error)
     CALL h5dclose_f(dsetv_id, error)
     !
     ! Dataset with references
     !
     CALL h5dcreate_f(file_id, dsetnamer, H5T_STD_REF_DSETREG, spacer_id, &
                      dsetr_id, error)
     !
     ! Create a reference to the hyperslab selection.
     !
     start(1) = 0 
     start(2) = 3 
     count(1) = 2
     count(2) = 3
     CALL h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, &
                                start, count, error) 
     CALL h5rcreate_f(file_id, dsetnamev, space_id, ref(1), error) 
     !
     ! Create a reference to elements selection.
     !
     CALL h5sselect_none_f(space_id, error)
     CALL h5sselect_elements_f(space_id, H5S_SELECT_SET_F, rank, num_points,&
                               coord, error) 
     CALL h5rcreate_f(file_id, dsetnamev, space_id, ref(2), error) 
     !
     ! Write dataset with the references. 
     !
     ref_size(1) = size(ref)
     CALL h5dwrite_f(dsetr_id, H5T_STD_REF_DSETREG, ref, ref_size, error) 
     !
     ! Close all objects.
     !
     CALL h5sclose_f(space_id, error)
     CALL h5sclose_f(spacer_id, error)
     CALL h5dclose_f(dsetr_id, error)
     CALL h5fclose_f(file_id, error)
     !
     ! Reopen the file to test selections.
     !
     CALL h5fopen_f (filename, H5F_ACC_RDWR_F, file_id, error)
     CALL h5dopen_f(file_id, dsetnamer, dsetr_id, error)
     !
     ! Read references to the dataset regions.
     !
     ref_size(1) = size(ref_out)
     CALL h5dread_f(dsetr_id, H5T_STD_REF_DSETREG, ref_out, ref_size, error) 
     ! 
     ! Dereference the first reference.
     ! 
     CALL H5rdereference_f(dsetr_id, ref_out(1), dsetv_id, error)
     CALL H5rget_region_f(dsetr_id, ref_out(1), space_id, error) 
     !
     ! Read selected data from the dataset.
     !
     CALL h5dread_f(dsetv_id, H5T_NATIVE_INTEGER, data_out, data_dims, error, &
                     mem_space_id = space_id, file_space_id = space_id)
          write(*,*) "Hypeslab selection"
          write(*,*)
          do i = 1,2 
          write(*,*) (data_out (i,j), j = 1,9)
          enddo
          write(*,*)
     CALL h5sclose_f(space_id, error)
     CALL h5dclose_f(dsetv_id, error)
     data_out = 0
     !  
     ! Dereference the second reference.
     ! 
     CALL H5rdereference_f(dsetr_id, ref_out(2), dsetv_id, error)
     CALL H5rget_region_f(dsetr_id, ref_out(2), space_id, error) 
     !
     ! Read selected data from the dataset.
     !
     CALL h5dread_f(dsetv_id, H5T_NATIVE_INTEGER, data_out, data_dims, error, &
                     mem_space_id = space_id, file_space_id = space_id)
          write(*,*) "Point selection"
          write(*,*)
          do i = 1,2 
          write(*,*) (data_out (i,j), j = 1,9)
          enddo
     !
     ! Close all objects
     !
     CALL h5sclose_f(space_id, error)
     CALL h5dclose_f(dsetv_id, error)
     CALL h5dclose_f(dsetr_id, error)
     !
     ! Close FORTRAN interface.
     !
     CALL h5close_f(error) 

     END PROGRAM REG_REFERENCE