hdf5/src/H5HFhdr.c

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5HFhdr.c
* Apr 10 2006
* Quincey Koziol <koziol@ncsa.uiuc.edu>
*
* Purpose: Heap header routines for fractal heaps.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5HF_PACKAGE /*suppress error about including H5HFpkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5HFpkg.h" /* Fractal heaps */
#include "H5Vprivate.h" /* Vectors and arrays */
/****************/
/* Local Macros */
/****************/
/* Limit on the size of the max. direct block size */
/* (This is limited to 32-bits currently, because I think it's unlikely to
* need to be larger, the 32-bit limit for H5V_log2_of2(n), and
* some offsets/sizes are encoded with a maxiumum of 32-bits - QAK)
*/
#define H5HF_MAX_DIRECT_SIZE_LIMIT ((hsize_t)2 * 1024 * 1024 * 1024)
/* Limit on the width of the doubling table */
/* (This is limited to 16-bits currently, because I think it's unlikely to
* need to be larger, and its encoded with a maxiumum of 16-bits - QAK)
*/
#define H5HF_WIDTH_LIMIT (64 * 1024)
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/*********************/
/* Package Variables */
/*********************/
/* Declare a free list to manage the H5HF_hdr_t struct */
H5FL_DEFINE(H5HF_hdr_t);
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_alloc
*
* Purpose: Allocate shared fractal heap header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 21 2006
*
*-------------------------------------------------------------------------
*/
H5HF_hdr_t *
H5HF_hdr_alloc(H5F_t *f)
{
H5HF_hdr_t *hdr = NULL; /* Shared fractal heap header */
H5HF_hdr_t *ret_value = NULL; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_alloc)
/*
* Check arguments.
*/
HDassert(f);
/* Allocate space for the shared information */
if(NULL == (hdr = H5FL_CALLOC(H5HF_hdr_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for fractal heap shared header")
/* Set the internal parameters for the heap */
hdr->f = f;
hdr->sizeof_size = H5F_SIZEOF_SIZE(f);
hdr->sizeof_addr = H5F_SIZEOF_ADDR(f);
/* Set the return value */
ret_value = hdr;
done:
if(!ret_value)
if(hdr)
(void)H5HF_cache_hdr_dest(f, hdr);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_alloc() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_free_space
*
* Purpose: Compute direct block free space, for indirect blocks of
* different sizes.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 21 2006
*
*-------------------------------------------------------------------------
*/
static hsize_t
H5HF_hdr_compute_free_space(H5HF_hdr_t *hdr, hsize_t iblock_size)
{
hsize_t acc_heap_size; /* Accumumated heap space */
hsize_t acc_dblock_free; /* Accumumated direct block free space */
unsigned curr_row; /* Current row in block */
hsize_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5HF_hdr_compute_free_space)
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(iblock_size > hdr->man_dtable.cparam.max_direct_size);
/* Set the free space in direct blocks */
acc_heap_size = 0;
acc_dblock_free = 0;
curr_row = 0;
while(acc_heap_size < iblock_size) {
acc_heap_size += hdr->man_dtable.row_block_size[curr_row] *
hdr->man_dtable.cparam.width;
acc_dblock_free += hdr->man_dtable.row_dblock_free[curr_row] *
hdr->man_dtable.cparam.width;
curr_row++;
} /* end while */
/* Set return value */
ret_value = acc_dblock_free;
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_compute_free_space() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_finish_init
*
* Purpose: Finish initializing info in shared heap header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 21 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_finish_init(H5HF_hdr_t *hdr)
{
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_finish_init)
/*
* Check arguments.
*/
HDassert(hdr);
/* Compute/cache some values */
hdr->heap_off_size = H5HF_SIZEOF_OFFSET_BITS(hdr->man_dtable.cparam.max_index);
if(H5HF_dtable_init(&hdr->man_dtable) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, FAIL, "can't initialize doubling table info")
/* Set the size of heap IDs */
hdr->heap_len_size = MIN(hdr->man_dtable.max_dir_blk_off_size,
((H5V_log2_gen((hsize_t)hdr->standalone_size) + 7) / 8));
hdr->id_len = hdr->heap_off_size + hdr->heap_len_size;
/* Set the free space in direct blocks */
for(u = 0; u < hdr->man_dtable.max_root_rows; u++) {
if(u < hdr->man_dtable.max_direct_rows)
hdr->man_dtable.row_dblock_free[u] = hdr->man_dtable.row_block_size[u] -
H5HF_MAN_ABS_DIRECT_OVERHEAD(hdr);
else
hdr->man_dtable.row_dblock_free[u] = H5HF_hdr_compute_free_space(hdr, hdr->man_dtable.row_block_size[u]);
#ifdef QAK
HDfprintf(stderr, "%s: row_block_size[%Zu] = %Hu\n", FUNC, u, hdr->man_dtable.row_block_size[u]);
HDfprintf(stderr, "%s: row_block_off[%Zu] = %Hu\n", FUNC, u, hdr->man_dtable.row_block_off[u]);
HDfprintf(stderr, "%s: row_dblock_free[%Zu] = %Hu\n", FUNC, u, hdr->man_dtable.row_dblock_free[u]);
#endif /* QAK */
} /* end for */
/* Initialize the block iterator for searching for free space */
if(H5HF_man_iter_init(&hdr->next_block) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, FAIL, "can't initialize space search block iterator")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_finish_init() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_init
*
* Purpose: Initialize shared fractal heap header for new heap
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 21 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_init(H5HF_hdr_t *hdr, haddr_t fh_addr, H5HF_create_t *cparam)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_init)
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(cparam);
#ifndef NDEBUG
/* Check for valid parameters */
if(cparam->managed.width == 0)
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "width must be greater than zero")
if(cparam->managed.width > H5HF_WIDTH_LIMIT)
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "width too large")
if(!POWER_OF_TWO(cparam->managed.width))
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "width not power of two")
if(cparam->managed.start_block_size == 0)
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "starting block size must be greater than zero")
if(!POWER_OF_TWO(cparam->managed.start_block_size))
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "starting block size not power of two")
if(cparam->managed.max_direct_size == 0)
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "max. direct block size must be greater than zero")
if(cparam->managed.max_direct_size > H5HF_MAX_DIRECT_SIZE_LIMIT)
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "max. direct block size too large")
if(!POWER_OF_TWO(cparam->managed.max_direct_size))
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "max. direct block size not power of two")
if(cparam->managed.max_direct_size < cparam->standalone_size)
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "max. direct block size not large enough to hold all managed blocks")
if(cparam->managed.max_index == 0)
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "max. heap size must be greater than zero")
if(cparam->managed.max_index > (8 * hdr->sizeof_size))
HGOTO_ERROR(H5E_HEAP, H5E_BADVALUE, FAIL, "max. heap size too large for file")
#endif /* NDEBUG */
/* Set the creation parameters for the heap */
hdr->heap_addr = fh_addr;
hdr->addrmap = cparam->addrmap;
hdr->standalone_size = cparam->standalone_size;
HDmemcpy(&(hdr->man_dtable.cparam), &(cparam->managed), sizeof(H5HF_dtable_cparam_t));
/* Set root table address to indicate that the heap is empty currently */
hdr->man_dtable.table_addr = HADDR_UNDEF;
/* Set free list header address to indicate that the heap is empty currently */
hdr->fs_addr = HADDR_UNDEF;
/* Note that the shared info is dirty (it's not written to the file yet) */
hdr->dirty = TRUE;
/* Make shared heap info reference counted */
if(H5HF_hdr_finish_init(hdr) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't create ref-count wrapper for shared fractal heap header")
done:
if(ret_value < 0)
if(hdr)
(void)H5HF_cache_hdr_dest(NULL, hdr);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_init() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_incr
*
* Purpose: Increment reference count on shared heap header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 27 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_incr(H5HF_hdr_t *hdr)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_incr)
/* Sanity check */
HDassert(hdr);
/* XXX: When "un-evictable" feature is finished, mark the header as
* unevictable on the first block to share it. - QAK
*/
/* Mark header as un-evictable when a block is depending on it */
if(hdr->rc == 0)
if(H5AC_pin_protected_entry(hdr->f, hdr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTPIN, FAIL, "unable to pin fractal heap header")
/* Increment reference count on shared header */
hdr->rc++;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_incr() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_decr
*
* Purpose: Decrement reference count on shared heap header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 27 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_decr(H5HF_hdr_t *hdr)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_decr)
/* Sanity check */
HDassert(hdr);
/* Decrement reference count on shared header */
hdr->rc--;
/* Mark header as evictable again when no child blocks depend on it */
if(hdr->rc == 0)
if(H5AC_unpin_entry(hdr->f, hdr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTUNPIN, FAIL, "unable to unpin fractal heap header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_decr() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_dirty
*
* Purpose: Mark heap header as dirty
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 27 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_dirty(H5HF_hdr_t *hdr)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_dirty)
#ifdef QAK
HDfprintf(stderr, "%s: Marking heap header as dirty\n", FUNC);
#endif /* QAK */
/* Sanity check */
HDassert(hdr);
/* Mark header as dirty in cache */
if(H5AC_mark_pinned_entry_dirty(hdr->f, hdr, FALSE, 0) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTMARKDIRTY, FAIL, "unable to mark fractal heap header as dirty")
/* Set the dirty flags for the heap header */
hdr->dirty = TRUE;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_dirty() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_adj_free
*
* Purpose: Adjust the free space for a heap
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* May 9 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_adj_free(H5HF_hdr_t *hdr, ssize_t amt)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_adj_free)
#ifdef QAK
HDfprintf(stderr, "%s: amt = %Zd\n", FUNC, amt);
#endif /* QAK */
/*
* Check arguments.
*/
HDassert(hdr);
/* Update heap header */
HDassert(amt > 0 || hdr->total_man_free >= (hsize_t)-amt);
hdr->total_man_free += amt;
#ifdef QAK
HDfprintf(stderr, "%s: hdr->total_man_free = %Hu\n", FUNC, hdr->total_man_free);
#endif /* QAK */
/* Mark heap header as modified */
if(H5HF_hdr_dirty(hdr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark heap header as dirty")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_adj_free() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_extend_heap
*
* Purpose: Extend heap to cover more space
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Apr 10 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_extend_heap(H5HF_hdr_t *hdr, hsize_t new_size, hsize_t extra_free)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5HF_hdr_extend_heap)
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(new_size >= hdr->total_size);
/* Set the total space in heap */
hdr->total_size = new_size;
hdr->man_size = new_size;
/* Increment the free space in direct blocks */
hdr->total_man_free += extra_free;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5HF_hdr_extend_heap() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_inc_alloc
*
* Purpose: Increase allocated size of heap
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Apr 24 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_inc_alloc(H5HF_hdr_t *hdr, hsize_t new_alloc_size, unsigned nentries)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_inc_alloc)
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(new_alloc_size >= hdr->man_alloc_size);
/* Advance the iterator for the current location with in the indirect block */
if(hdr->next_block.curr)
if(H5HF_man_iter_next(hdr, &hdr->next_block, nentries) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTNEXT, FAIL, "unable to advance current block iterator location")
/* Update the "allocated" size within the heap */
hdr->man_alloc_size = new_alloc_size;
#ifdef QAK
HDfprintf(stderr, "%s: hdr->man_alloc_size = %Hu\n", FUNC, hdr->man_alloc_size);
#endif /* QAK */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_inc_alloc() */
/*-------------------------------------------------------------------------
* Function: H5HF_hdr_empty
*
* Purpose: Reset heap header to 'empty heap' state
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* May 17 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_hdr_empty(H5HF_hdr_t *hdr)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_hdr_empty)
#ifdef QAK
HDfprintf(stderr, "%s: Reseting heap header to empty\n", FUNC);
#endif /* QAK */
/* Sanity check */
HDassert(hdr);
/* Reset root pointer information */
hdr->man_dtable.curr_root_rows = 0;
hdr->man_dtable.table_addr = HADDR_UNDEF;
/* Shrink heap size */
hdr->total_size = hdr->std_size;
hdr->man_size = 0;
/* Reset the free space in direct blocks */
hdr->total_man_free = 0;
/* Mark heap header as modified */
if(H5HF_hdr_dirty(hdr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark header as dirty")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_hdr_empty() */