1998-02-16 13:28:33 +08:00
|
|
|
Installation instructions for Parallel HDF5
|
|
|
|
-------------------------------------------
|
1999-05-22 11:58:47 +08:00
|
|
|
(last updated: May 21, 1999)
|
1998-02-16 13:28:33 +08:00
|
|
|
|
1999-05-22 11:58:47 +08:00
|
|
|
1. Overview
|
|
|
|
-----------
|
1998-02-16 13:28:33 +08:00
|
|
|
This file contains instructions for the installation of parallel
|
1998-04-24 08:02:08 +08:00
|
|
|
HDF5. Platforms supported by this release are SGI Origin 2000,
|
|
|
|
IBM SP2, and the Intel TFLOP. The steps are kind of unnatural and
|
|
|
|
will be more automized in the next release. If you have difficulties
|
|
|
|
installing the software in your system, please send mail to
|
1998-02-16 13:28:33 +08:00
|
|
|
hdfparallel@ncsa.uiuc.edu
|
1999-05-22 11:58:47 +08:00
|
|
|
In your mail, please enclose the output of "uname -a". Also attach the
|
|
|
|
content of "config.log" if you have run the "configure" command.
|
1998-04-24 08:02:08 +08:00
|
|
|
|
1998-02-16 13:28:33 +08:00
|
|
|
First, you must obtain and unpack the HDF5 source as
|
|
|
|
described in the file INSTALL. You also need to obtain the
|
|
|
|
information of the include and library paths of MPI and MPIO
|
|
|
|
software installed in your system since the parallel HDF5 library
|
|
|
|
uses them for parallel I/O access.
|
|
|
|
|
|
|
|
|
1999-05-22 11:58:47 +08:00
|
|
|
2. Quick Instruction for known systems
|
|
|
|
--------------------------------------
|
|
|
|
The following shows particular steps to run the parallel HDF5
|
|
|
|
configure for a few machines we tested. If your particular platform
|
|
|
|
is not shown or somehow the steps do not work for yours, please go
|
|
|
|
to the next section for more detail explanations.
|
|
|
|
|
|
|
|
IBM SP2: follow the instructions in INSTALL.ibm.sp.parallel.
|
|
|
|
|
|
|
|
TFLOPS: follow the instuctions in INSTALL.ascired.
|
|
|
|
|
|
|
|
SGI Origin 2000:
|
|
|
|
Cray T3E:
|
|
|
|
(where MPI-IO is part of system MPI library such as mpt 1.3)
|
|
|
|
|
|
|
|
#!/bin/sh
|
|
|
|
|
|
|
|
RUNPARALLEL="mpirun -np 2"
|
|
|
|
export RUNPARALLEL
|
|
|
|
LIBS="-lmpi"
|
|
|
|
export LIBS
|
|
|
|
./configure --enable-parallel --disable-shared --prefix=$PWD/installdir
|
|
|
|
make
|
|
|
|
make check
|
|
|
|
make install
|
|
|
|
|
|
|
|
|
|
|
|
SGI Origin 2000:
|
|
|
|
Cray T3E:
|
|
|
|
(where MPI-IO is not part of system MPI library or I want to
|
|
|
|
use my own version of MPIO)
|
|
|
|
|
|
|
|
|
|
|
|
mpi1_inc="" #mpi-1 include
|
|
|
|
mpi1_lib="" #mpi-1 library
|
|
|
|
mpio_inc=-I$HOME/ROMIO/include #mpio include
|
|
|
|
mpio_lib="-L$HOME/ROMIO/lib/IRIX64" #mpio library
|
|
|
|
|
|
|
|
MPI_INC="$mpio_inc $mpi1_inc"
|
|
|
|
MPI_LIB="$mpio_lib $mpi1_lib"
|
|
|
|
|
|
|
|
#for version 1.1
|
|
|
|
CPPFLAGS=$MPI_INC
|
|
|
|
export CPPFLAGS
|
|
|
|
LDFLAGS=$MPI_LIB
|
|
|
|
export LDFLAGS
|
|
|
|
RUNPARALLEL="mpirun -np 2"
|
|
|
|
export RUNPARALLEL
|
|
|
|
LIBS="-lmpio -lmpi"
|
|
|
|
export LIBS
|
|
|
|
|
|
|
|
./configure --enable-parallel --disable-shared --prefix=$PWD/installdir
|
|
|
|
make
|
|
|
|
make check
|
|
|
|
make install
|
|
|
|
|
|
|
|
|
|
|
|
3. Detail explanation
|
|
|
|
---------------------
|
|
|
|
[Work in progress. Please send mail to hdfparallel@ncsa.uiuc.edu.]
|
|
|
|
|
|
|
|
|
1998-02-16 13:28:33 +08:00
|
|
|
|
|
|
|
|
1998-04-24 08:02:08 +08:00
|
|
|
|