2001-05-25 11:15:03 +08:00
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HDF5 library version 1.5.7 currently under development
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2001-05-10 13:08:54 +08:00
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================================================================================
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1998-10-30 22:40:37 +08:00
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2000-03-24 05:34:06 +08:00
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INTRODUCTION
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1998-10-30 22:40:37 +08:00
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2001-02-22 05:32:03 +08:00
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This document describes the differences between HDF5-1.4.0 and
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HDF5-1.5-snap0, and contains information on the platforms tested and
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known problems in HDF5-1.5-snap0. For more details check the HISTORY.txt
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2000-12-21 01:04:49 +08:00
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file in the HDF5 source.
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1998-10-30 22:40:37 +08:00
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2000-12-09 02:33:20 +08:00
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The HDF5 documentation can be found on the NCSA ftp server
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2000-03-24 05:34:06 +08:00
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(ftp.ncsa.uiuc.edu) in the directory:
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1998-10-30 22:40:37 +08:00
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2000-03-24 05:34:06 +08:00
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/HDF/HDF5/docs/
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1998-07-21 04:16:04 +08:00
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2000-03-24 05:34:06 +08:00
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For more information look at the HDF5 home page at:
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http://hdf.ncsa.uiuc.edu/HDF5/
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1998-01-30 05:56:06 +08:00
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2000-03-24 05:34:06 +08:00
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If you have any questions or comments, please send them to:
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1998-08-07 05:32:33 +08:00
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2000-03-24 05:34:06 +08:00
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hdfhelp@ncsa.uiuc.edu
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1998-08-31 21:46:47 +08:00
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2000-03-24 05:34:06 +08:00
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CONTENTS
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1998-08-31 21:46:47 +08:00
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2000-12-21 01:04:49 +08:00
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- New Features
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2001-02-22 05:32:03 +08:00
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- Bug Fixes since HDF5-1.4.0
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2000-03-24 05:34:06 +08:00
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- Platforms Tested
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- Known Problems
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1998-08-31 21:46:47 +08:00
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2001-02-22 05:32:03 +08:00
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Bug Fixes since HDF5-1.4.0
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2000-03-24 05:34:06 +08:00
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==========================
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1998-01-30 05:56:06 +08:00
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2001-03-22 07:19:19 +08:00
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Library
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-------
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2001-05-02 23:00:10 +08:00
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* Fixed bug with contiguous hyperslabs not being detected, causing
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slower I/O than necessary.
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* Fixed bug where non-aligned hyperslab I/O on chunked datasets was
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causing errors during I/O
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* The RCSID string in H5public.h was causing the C++ compiling problem
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because when it was included multiple times, C++ did not like multiple
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definitions of the same static variable. All occurance of RCSID
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definition are removed since we have not used it consistently before.
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* Fixed bug with non-zero userblock sizes causing raw data to not write
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correctly.
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* Fixed build on Linux systems with --enable-static-exec flag. It now
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works correctly.
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* IMPORTANT: Fixed file metadata corruption bug which could cause metadata
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data loss in certain situations.
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2001-05-10 13:08:54 +08:00
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* The allocation by alignment (H5Pset_alignment) feature code somehow
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got dropped in some 1.3.x version. Re-implemented it with "new and
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improved" algorithm. It keeps track of "wasted" file-fragment in
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the free-list too.
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2001-06-15 04:08:38 +08:00
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* Removed limitation that the data transfer buffer size needed to be
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set for datasets whose dimensions were too large for the 'all' selection
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code to handle. Any size dimensioned datasets should be handled
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correctly now.
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2001-07-11 04:17:24 +08:00
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* Changed behavior of H5Tget_member_type to correctly emulate HDF5 v1.2.x
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when --enable-hdf5v1_2 configure flag is enabled.
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2001-01-10 04:07:23 +08:00
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2001-03-22 07:19:19 +08:00
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Configuration
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-------------
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2001-05-02 23:00:10 +08:00
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* Changed the default value of $NPROCS from 2 to 3 since 3 processes
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have a much bigger chance catching parallel errors than just 2.
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* Basic port to Compaq (nee DEC) Alpha OSF 5.
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2001-01-10 04:07:23 +08:00
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2001-03-22 07:19:19 +08:00
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Tools
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-----
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2001-01-10 04:07:23 +08:00
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2001-03-22 07:19:19 +08:00
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Documentation
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-------------
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1999-02-05 08:39:05 +08:00
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2001-02-22 05:32:03 +08:00
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New Features
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============
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2001-01-11 01:30:15 +08:00
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2001-05-02 23:00:10 +08:00
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* C++ API:
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- Added two new member functions: Exception::getFuncName() and
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Exception::getCFuncName() to provide the name of the member
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function, where an exception is thrown.
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- IdComponent::operator= becomes a virtual function because
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DataType, DataSpace, and PropList provide their own
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implementation. The new operator= functions invoke H5Tcopy,
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H5Scopy, and H5Pcopy to make a copy of a datatype, dataspace,
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and property list, respectively.
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* F90 API:
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- Added aditional parameter "dims" to the h5dread/h5dwrite and
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h5aread/h5awrite subroutines. This parameter is 1D array of size
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7 and contains the sizes of the data buffer dimensions.
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* F90 static library is available on Windows platforms. See
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INSTALL_Windows.txt for details.
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2001-06-22 03:45:08 +08:00
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* F90 APIs are available on HPUX 11.00 and IBM SP platforms.
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2001-05-09 05:04:28 +08:00
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* File sizes greater than 2GB are now supported on Linux systems with
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version 2.4.x or higher kernels.
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2001-05-13 01:39:31 +08:00
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* Added a global string variable H5_lib_vers_info_g which holds the
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HDF5 library version information. This can be used to identify
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an hdf5 library or hdf5 application binary.
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Also added a verification of the consistency between H5_lib_vers_info_g
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and other version information in the source code.
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2001-05-13 01:55:47 +08:00
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* H5 <-> GIF convertor has been added. This is available under
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tools/gifconv. The convertor supports the ability to create animated
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gifs as well.
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2001-05-31 03:51:39 +08:00
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* Parallel HDF5 now runs on the HP V2500 and HP N4000 machines.
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2001-06-29 02:59:16 +08:00
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* Verified correct operation of library on Solaris 2.8 in both 64-bit and
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32-bit compilation modes. See INSTALL document for instructions on
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compiling the distribution with 64-bit support.
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2001-07-05 23:14:24 +08:00
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* Modified the Pablo build procedure to permit building of the instrumented
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library to link either with the Trace libraries as before or with the
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Pablo Performance Caputure Facility.
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2001-01-11 01:30:15 +08:00
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2000-12-21 01:04:49 +08:00
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Platforms Tested
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2000-03-24 05:34:06 +08:00
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================
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2000-12-21 01:04:49 +08:00
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2001-02-21 03:35:07 +08:00
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AIX 4.3.3.0 (IBM SP powerpc) mpcc_r 3.6.6
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2001-02-08 03:49:02 +08:00
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Cray T3E sn6711 2.0.5.45 Cray Standard C Version 6.4.0.0
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2001-02-07 00:18:21 +08:00
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Cray Fortran Version 3.4.0.2
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Cray SV1 sn9605 10.0.0.7 Cray Standard C Version 6.4.0.0
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2000-12-21 01:04:49 +08:00
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Cray Fortran Version 3.4.0.2
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2001-03-30 00:49:41 +08:00
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FreeBSD 4.3 gcc 2.95.2
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2000-12-21 02:53:52 +08:00
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g++ 2.95.2
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2000-12-21 01:04:49 +08:00
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HP-UX B.10.20 HP C HP92453-01 A.10.32.30
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2000-12-09 02:33:20 +08:00
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HP-UX B.11.00 HP C HP92453-01 A.11.00.13
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2001-05-31 03:51:39 +08:00
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HP C HP92453-01 A.11.01.20
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2000-03-24 05:34:06 +08:00
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IRIX 6.5 MIPSpro cc 7.30
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IRIX64 6.5 (64 & n32) MIPSpro cc 7.3.1m
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2000-12-22 00:17:05 +08:00
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mpt.1.4.0.2
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2001-01-19 05:11:33 +08:00
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mpich-1.2.1
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2001-05-26 02:49:33 +08:00
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Linux 2.4.4 gcc-2.95.3
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g++ 2.95.3
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2000-12-21 02:53:52 +08:00
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Linux 2.2.16-3smp gcc-2.95.2
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2000-12-21 01:04:49 +08:00
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g++ 2.95.2
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pgf90 3.1-3
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2000-03-24 05:34:06 +08:00
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OSF1 V4.0 DEC-V5.2-040
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2000-12-21 01:04:49 +08:00
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Digital Fortran 90 V4.1-270
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SunOS 5.6 WorkShop Compilers 5.0 98/12/15 C 5.0
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(Solaris 2.6) WorkShop Compilers 5.0 99/10/25 Fortran 90
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2.0 Patch 107356-04
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Workshop Compilers 5.0 98/12/15 C++ 5.0
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SunOS 5.7 WorkShop Compilers 5.0 98/12/15 C 5.0
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(Solaris 2.7) WorkShop Compilers 5.0 99/10/25 Fortran 90
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2.0 Patch 107356-04
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Workshop Compilers 5.0 98/12/15 C++ 5.0
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2001-02-21 03:35:07 +08:00
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TFLOPS r1.0.4 v4.0 mpich-1.2.1 with local changes
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2000-12-21 01:04:49 +08:00
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Windows NT4.0, 2000 (NT5.0) MSVC++ 6.0
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2001-02-03 03:38:13 +08:00
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Windows 98 MSVC++ 6.0
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2000-03-24 05:34:06 +08:00
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2000-12-21 01:04:49 +08:00
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Known Problems
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2000-03-24 05:34:06 +08:00
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==============
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2001-04-27 12:03:59 +08:00
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* DLLs do not work on Windows 98 (and probably on NT and 2000 too)
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2000-03-24 05:34:06 +08:00
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2001-02-21 03:35:07 +08:00
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* The stream-vfd test uses ip port 10007 for testing. If another application
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is already using that port address, the test will hang indefinitely and
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has to be terminated by the kill command. To try the test again, change
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the port address in test/stream_test.c to one not being used in the host.
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2001-02-01 01:28:57 +08:00
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* The --enable-static-exec configure flag fails to compile for Solaris
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platforms. This is due to the fact that not all of the system
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libraries on Solaris are available in a static format.
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2001-02-21 03:35:07 +08:00
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The --enable-static-exec configure flag also fails to correctly compile
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2001-05-26 02:49:33 +08:00
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on IBM SP2 platform for the serial mode. The parallel mode works fine
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2001-02-21 03:35:07 +08:00
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with this option.
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2001-02-01 01:28:57 +08:00
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It is suggested that you don't use this option on these platforms
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during configuration.
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2001-01-19 05:11:33 +08:00
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* With the gcc 2.95.2 compiler, HDF 5 uses the `-ansi' flag during
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compilation. The ANSI version of the compiler complains about not being
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able to handle the `long long' datatype with the warning:
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2001-01-12 06:47:33 +08:00
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2001-01-19 05:11:33 +08:00
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warning: ANSI C does not support `long long'
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This warning is innocuous and can be safely ignored.
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2001-01-12 06:47:33 +08:00
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2000-12-19 06:06:13 +08:00
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* SunOS 5.6 with C WorkShop Compilers 4.2: Hyperslab selections will
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2000-03-24 05:34:06 +08:00
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fail if library is compiled using optimization of any level.
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2000-02-10 05:36:37 +08:00
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2001-02-03 03:38:13 +08:00
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* When building hdf5 tools and applications on windows platform, a linking
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2001-02-09 01:03:03 +08:00
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warning: defaultlib "LIBC" conflicts with use of other libs will appear
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on debug version when running VC++6.0. This warning doesn't affect building
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2001-02-10 06:37:18 +08:00
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and testing hdf5 applications. We will continue investigating this.
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* h5toh4 converter fails two cases(tstr.h5 and tmany.h5) for release dll version on
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2001-02-20 03:37:14 +08:00
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windows 2000 and NT. The reason is possibly due to windows NT DLL
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convention on freeing memory. It seems that memory cannot be free
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across library or DLL. It is still under investigated.
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2001-02-10 06:37:18 +08:00
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2000-12-19 06:06:13 +08:00
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* The Stream VFD was not tested yet under Windows.
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It is not supported in the TFLOPS machine.
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2000-12-22 00:17:05 +08:00
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* Shared library option is broken for IBM SP and some Origin 2000 platforms.
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One needs to run ./configure with '--disable-shared'
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2000-12-19 06:06:13 +08:00
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* The ./dsets tests failed in the TFLOPS machine if the test program,
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dsets.c, is compiled with the -O option. The hdf5 library still works
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2000-12-20 01:44:28 +08:00
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correctly with the -O option. The test program works fine if it is
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compiled with -O1 or -O0. Only -O (same as -O2) causes the test
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program to fail.
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2000-12-20 00:08:47 +08:00
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* Certain platforms give false negatives when testing h5ls:
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- Solaris x86 2.5.1, Cray T3E and Cray J90 give errors during testing
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when displaying object references in certain files. These are benign
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differences due to the difference in sizes of the objects created on
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those platforms. h5ls appears to be dumping object references
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correctly.
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- Cray J90 (and Cray T3E?) give errors during testing when displaying
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some floating-point values. These are benign differences due to the
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different precision in the values displayed and h5ls appears to be
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dumping floating-point numbers correctly.
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2001-01-30 06:52:32 +08:00
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* Before building HDF5 F90 Library from source on Crays (T3E and J90)
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replace H5Aff.f90, H5Dff.f90 and H5Pff.f90 files in the fortran/src subdirectory
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in the top level directory with the Cray-specific files from the
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ftp://hdf.ncsa.uiuc.edu/pub/ougoing/hdf5/hdf5-1.4.0-beta/F90_source_for_Crays
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directory.
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2001-02-10 01:39:16 +08:00
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* The h4toh5 utility produces images that do not correctly conform
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to the HDF5 Image and Palette Specification.
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2001-02-20 03:37:14 +08:00
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2001-05-26 02:49:33 +08:00
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http://hdf.ncsa.uiuc.edu/HDF5/doc/ImageSpec.html
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2001-02-20 03:37:14 +08:00
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2001-02-10 01:39:16 +08:00
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Several required HDF5 attributes are omitted, and the dataspace
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is reversed (i.e., the ht. and width of the image dataset is
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incorrectly described.) For more information, please see:
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2001-02-20 03:37:14 +08:00
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2001-02-10 01:39:16 +08:00
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http://hdf.ncsa.uiuc.edu/HDF5/H5Image/ImageDetails.htm
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2001-03-29 05:33:01 +08:00
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