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hdf5/INSTALL.ascired

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[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
FOR THE INTEL TFLOPS MACHINE:
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
Below are the step-by-step procedures for building, testing, and
installing both the sequential and parallel versions of the HDF5 library.
---------------
Sequential HDF5:
---------------
The setup process for building the sequential HDF5 library for the
ASCI Red machine is done by a coordination of events from sasn100 and
janus. Special effort must be made to move the compiled and linked
testers to disks local to the processors for execution. This special
effort is shown here at steps 9) and steps 10).
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
The total required steps are something similar to:
FROM SASN100,
[svn-r673] Changes since 19980908 ---------------------- ./COPYING Reformatted as text instead of C. Removed zlib crew from the list of contributors since no zlib code is actually in the hdf5 library. ./INSTALL ./INSTALL.ascired ./MANIFEST Minor updates for Beta release including version number change. ./INSTALL_MAINT Added information about making a release. ./RELEASE Updated function list based on public header files. ./bin/checkposix Got rid of complaints about some obvious things. ./doc/html/H5.api.html ./doc/html/RM_H5F.html ./src/H5F.c ./src/H5Fpublic.h ./test/tfile.c Changed H5Fget_create_template() and H5Fget_access_template() to H5Fget_create_plist() and H5Fget_access_plist() since that conforms better to lots of other names. ./doc/html/Datatypes.html ./doc/html/ExternalFiles.html ./doc/html/Files.html ./doc/html/H5.api.html ./doc/html/H5.sample_code.html ./doc/html/RM_H5F.html ./doc/html/RM_H5Front.html Changed `template' to `property list', etc. ./doc/html/Ragged.html [NEW] Documentation for ragged arrays. ./src/H5Iprivate.h ./src/H5Ipublic.h ./src/H5I.c Changed the scope of some symbols to be more local. ./src/H5.c ./src/H5AC.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5I.c ./src/H5O.c ./src/H5Ocomp.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5P.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5private.h Fixed some violations of our naming scheme by adding HD to the beginning of all Posix functions.
1998-09-09 03:15:44 +08:00
1) uncompress hdf5-1.1.0.tar.Z
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
[svn-r673] Changes since 19980908 ---------------------- ./COPYING Reformatted as text instead of C. Removed zlib crew from the list of contributors since no zlib code is actually in the hdf5 library. ./INSTALL ./INSTALL.ascired ./MANIFEST Minor updates for Beta release including version number change. ./INSTALL_MAINT Added information about making a release. ./RELEASE Updated function list based on public header files. ./bin/checkposix Got rid of complaints about some obvious things. ./doc/html/H5.api.html ./doc/html/RM_H5F.html ./src/H5F.c ./src/H5Fpublic.h ./test/tfile.c Changed H5Fget_create_template() and H5Fget_access_template() to H5Fget_create_plist() and H5Fget_access_plist() since that conforms better to lots of other names. ./doc/html/Datatypes.html ./doc/html/ExternalFiles.html ./doc/html/Files.html ./doc/html/H5.api.html ./doc/html/H5.sample_code.html ./doc/html/RM_H5F.html ./doc/html/RM_H5Front.html Changed `template' to `property list', etc. ./doc/html/Ragged.html [NEW] Documentation for ragged arrays. ./src/H5Iprivate.h ./src/H5Ipublic.h ./src/H5I.c Changed the scope of some symbols to be more local. ./src/H5.c ./src/H5AC.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5I.c ./src/H5O.c ./src/H5Ocomp.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5P.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5private.h Fixed some violations of our naming scheme by adding HD to the beginning of all Posix functions.
1998-09-09 03:15:44 +08:00
2) tar xvf hdf5-1.1.0.tar
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
3) cd ./hdf5
4) ./configure tflop
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
5) make H5detect
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
FROM JANUS,
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
6) cd ./hdf5
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
7) make H5Tinit.c
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
FROM SASN100,
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
8) make >&! comp.out &
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
When everything is finished compiling and linking,
FROM JANUS,
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
9) cp -r ../hdf5 /scratch
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
10) cd /scratch/hdf5/test
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
11) make test >&! test.out
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
Once satisfied with the test results, as long as you
have the correct permission,
FROM SASN100,
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
12) make install
---------------
Parallel HDF5:
---------------
The setup process for building the parallel version of the HDF5 library for the
ASCI Red machine is very similar to the sequential version. It is done by a
coordination of events from sasn100 and janus. Special effort must be made to
move the compiled and linked single processor testers to disks local to the
processor for execution. This special effort is shown here at steps 9) and
steps 10). Following these test, there are the edit, compile, link, and
execution of parallel tests described in steps 12) through 16).
The total required steps are something similar to:
FROM SASN100,
[svn-r673] Changes since 19980908 ---------------------- ./COPYING Reformatted as text instead of C. Removed zlib crew from the list of contributors since no zlib code is actually in the hdf5 library. ./INSTALL ./INSTALL.ascired ./MANIFEST Minor updates for Beta release including version number change. ./INSTALL_MAINT Added information about making a release. ./RELEASE Updated function list based on public header files. ./bin/checkposix Got rid of complaints about some obvious things. ./doc/html/H5.api.html ./doc/html/RM_H5F.html ./src/H5F.c ./src/H5Fpublic.h ./test/tfile.c Changed H5Fget_create_template() and H5Fget_access_template() to H5Fget_create_plist() and H5Fget_access_plist() since that conforms better to lots of other names. ./doc/html/Datatypes.html ./doc/html/ExternalFiles.html ./doc/html/Files.html ./doc/html/H5.api.html ./doc/html/H5.sample_code.html ./doc/html/RM_H5F.html ./doc/html/RM_H5Front.html Changed `template' to `property list', etc. ./doc/html/Ragged.html [NEW] Documentation for ragged arrays. ./src/H5Iprivate.h ./src/H5Ipublic.h ./src/H5I.c Changed the scope of some symbols to be more local. ./src/H5.c ./src/H5AC.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5I.c ./src/H5O.c ./src/H5Ocomp.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5P.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5private.h Fixed some violations of our naming scheme by adding HD to the beginning of all Posix functions.
1998-09-09 03:15:44 +08:00
1) uncompress hdf5-1.1.0.tar.Z
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
[svn-r673] Changes since 19980908 ---------------------- ./COPYING Reformatted as text instead of C. Removed zlib crew from the list of contributors since no zlib code is actually in the hdf5 library. ./INSTALL ./INSTALL.ascired ./MANIFEST Minor updates for Beta release including version number change. ./INSTALL_MAINT Added information about making a release. ./RELEASE Updated function list based on public header files. ./bin/checkposix Got rid of complaints about some obvious things. ./doc/html/H5.api.html ./doc/html/RM_H5F.html ./src/H5F.c ./src/H5Fpublic.h ./test/tfile.c Changed H5Fget_create_template() and H5Fget_access_template() to H5Fget_create_plist() and H5Fget_access_plist() since that conforms better to lots of other names. ./doc/html/Datatypes.html ./doc/html/ExternalFiles.html ./doc/html/Files.html ./doc/html/H5.api.html ./doc/html/H5.sample_code.html ./doc/html/RM_H5F.html ./doc/html/RM_H5Front.html Changed `template' to `property list', etc. ./doc/html/Ragged.html [NEW] Documentation for ragged arrays. ./src/H5Iprivate.h ./src/H5Ipublic.h ./src/H5I.c Changed the scope of some symbols to be more local. ./src/H5.c ./src/H5AC.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5I.c ./src/H5O.c ./src/H5Ocomp.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5P.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5private.h Fixed some violations of our naming scheme by adding HD to the beginning of all Posix functions.
1998-09-09 03:15:44 +08:00
2) tar xvf hdf5-1.1.0.tar
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
3) cd ./hdf5
4) sh INSTALL_parallel.ascired /* this is different from the sequential version */
5) make H5detect
FROM JANUS,
6) cd ./hdf5
7) make H5Tinit.c
FROM SASN100,
8) make >&! comp.out &
When everything is finished compiling and linking,
FROM JANUS,
[svn-r399] Purpose: Change in Documentation for the INSTALL process on the ASCI Red Problem: As part of the parallel HDF5 install process, upon compiling the library and sequential testers, it is necessary to copy the testers onto local disk prior to testing. This is almost done by steps 9-11) ... 9) cp -r ../hdf5 ../scratch 10) cd /scratch/hdf5/test 11) make test >&! test.out After the copying to /scratch, when the "make test" is run, dependencies are checked and it is determined that the executables need to be rebuilt. Unfortunately, the MPI-IO libraries in sasn100:/usr/community/mpi-io are not accessible on ASCI Red, so that step #11 above gives an error. Solution: Albert Cheng and Robb Matzke suggested to add the "-p" option in step #9, if available, to maintain the original modifications. Those install steps were changed to: ... 9) cp -rp ../hdf5 ../scratch 10) cd /scratch/hdf5/test 11) make test >&! test.out Everything works fine! Platform tested: janus - ASCI Red sasn100 - TFLOPS Application server
1998-05-20 02:42:16 +08:00
9) cp -rp ../hdf5 /scratch
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
10) cd /scratch/hdf5/test
11) make test >&! test.out
Once satisfied with the single processor test results,
FROM SASN100,
12) cd testpar
[svn-r565] Purpose: Documentation Solution: Reference the README file in testpar directory for expansion on how to input User preferered file prefixes. Platform tested: ASCI Red
1998-08-04 04:45:06 +08:00
13) go through the README file.
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
14) make -f Makefile.ascired
[svn-r565] Purpose: Documentation Solution: Reference the README file in testpar directory for expansion on how to input User preferered file prefixes. Platform tested: ASCI Red
1998-08-04 04:45:06 +08:00
[svn-r368] Purpose: Documentation (mostly) Solution: Parallel HDF5 support on Intel TFLOPS machine using PFS file system and MPIO. Platform tested: Intel TFLOPS (ASCI Red)
1998-04-24 08:02:08 +08:00
When everything is finished compiling and linking,
FROM JANUS,
15) cd ./hdf5/testpar
16) make test -f Makefile.ascired >&! test.out
Once satisfied with the parallel test results, as long as you
have the correct permission,
FROM SASN100,
17) make install
[svn-r340] Purpose: Documentation Problem: The installation steps of the HDF5 library for the ASCI Red machine must be split up between the ASCI Red machine itself and its support machine. Solution: An installation list has been drawn-up which explicitly states which machine is responsible for which step of the installation. Platform tested: ASCI Red Machine, TFLOPS Application server
1998-04-10 06:48:52 +08:00
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